Post by Admin on Oct 20, 2022 5:58:57 GMT
Diverse Ancestry among Himera’s Soldiers of the 480 BCE Battle.
Most Himerans associated with the battles can be found clustering on the PCA closely with individuals from the Greece_LBA, consistent with a major contribution of individuals of primarily Greek ancestry in the Himeran forces and substantial genetic continuity between the LBA period in Greece and fifth-century-BCE Greek colonies in Sicily. These soldiers with at least some Greek ancestry could have been inhabitants of the colony or supporting armies from other colonies, such as Syracuse. Seven of the 16 soldiers of the 480 BCE battle (Sicily_Himera_480BCE_1) and all 5 of the soldiers of the 409 BCE battle (Sicily_Himera_409BCE) are part of this main genetic cluster. Using the qpWave/qpAdm framework, we can model each of the soldiers in these two groups as deriving their ancestry either 100% from a group related to Greece_LBA or from an admixture between a Sicilian LBA or IA source and an Aegean-related source in varying proportions (SI Appendix, Tables S16 and S17), suggesting that many soldiers (and all studied from the 409 BCE battle) were plausibly the descendants of the Greek colonizers of Sicily and that intermarriage between Greeks and Sicilian locals was practiced (63). This genetic evidence adds to our understanding of social practices in Greek colonies in Sicily, because it is difficult to detect intermarriage archaeologically due to the fact that the presence of local Sicilian objects at Greek colonies may represent trade rather than intermarriage (59, 64, 65). Genetic data also provide information that may be invisible archaeologically, because individuals would have had the agency to decide which burial traditions and objects to adopt when interring their dead, and these archaeological identity markers, and the way individuals viewed their own identities, may or may not align with genetic ancestry (59, 66).
Beyond the intermarriage between locals and Himera’s Greek settlers, it is important to consider the possibility that the composition of the population might also have been influenced by a large-scale influx of Dorians from Agrigento after a political takeover by the Agrigentine tyrant, Theron, in 476 BCE, during which thousands of Himera’s inhabitants were killed (Diod. 11.49); however, the limited sample size available for analysis at this point and the lack of comparative data from Dorian contexts does not allow us to test this hypothesis. In any case, both groups of soldiers are heterogeneous in their admixture with local Sicilians, indicating a different genetic history for each individual; while we can compellingly document that significant genetic variation existed, a larger sample size than we have available would be necessary to adequately characterize the distribution of genetic variation encompassed by Sicilian Greek ethnicity in this period.
Among the soldiers of the 480 BCE battle, we find nine individuals that carry genetic ancestry not consistent with the first group (Fig. 2 and SI Appendix, Figs. S10–S13). We tested ancestry models with qpAdm for the higher coverage individuals.
Sicily_Himera_480BCE_2 consists of two outlying individuals (I10946/W1771 and I10950/W814) that fall on the PCA intermediate between the main cluster and central European individuals, a differentiation also indicated by the relatively higher proportion of the WHG genetic cluster in ADMIXTURE. Testing a wide range of possible BA and IA sources with qpAdm, valid models of ancestry consist of mixtures of one source related to central or eastern Mediterranean groups (Sicilian, Aegean, or Balkan) and one source related to central or western European groups (France, Spain, Czechia, or Hungary). A genetic origin in the Balkans is suggested by their Y chromosomes, belonging to the E-V13 lineage, which has its highest modern-day frequency in that region (67).
Two individuals (I10943/W0396 and I10949/W0403; Sicily_Himera_480BCE_3) fall with modern northeastern European groups and eastern Baltic populations of the first millennium BCE and can be modeled using exclusively BA individuals from Lithuania as a proxy source (P = 0.129).
One low-coverage individual, I17870/W0336, falls intermediate between Sicily_Himera_480BCE_2 and Sicily_Himera_480BCE_3 on both PCA and with respect to the main ancestry clusters inferred from ADMIXTURE (Fig. 2).
Two (I10944/W0461 and I10947/W1774; Sicily_Himera_480BCE_4) fall with individuals from IA nomadic contexts in the Eurasian Steppe and carry in the ADMIXTURE analysis genetic components maximized in Han and Karitiana (Native Americans) that characterize most IA Steppe nomads (light green and purple, respectively, in SI Appendix, Fig. S2B). In qpAdm, their ancestry is consistent, with around 85–89% deriving from IA Central steppe nomads and 11–15% from an Aegean-like source, an admixture that plausibly could have taken place among the genetically diverse populations of the Steppe (68, 69). Their mitochondrial DNA (mtDNA) haplogroups suggest east Eurasian genetic roots: A6a, found so far only in modern-day China (70, 71), and N1a1a1a, restricted to Russia, Kazakhstan, and Mongolia (72).
Finally, one outlier (I10951/W0653; Sicily_Himera_480BCE_5) falls with modern Caucasus populations and intermediate to ancient Steppe and Caucasus individuals on the PCA and carries the highest proportion of the CHG component in ADMIXTURE (Fig. 2). A single one-way model with a group closely related to Armenia_MBA as the source fit the data (P = 0.293). Similarly, the second low-coverage individual, I17872/W0428, falls closest to populations from the Caucasus on the PCA (Fig. 2A).
Outgroup-f3 statistics with ancient groups reflect the same general patterns of genetic affinities (SI Appendix, Fig. S16), as do proportions of distal ancestry estimated with qpAdm (SI Appendix, Table S8 and Dataset S5). The groups can all be modeled as deriving differing proportions of ancestry from groups related to Turkey_N_Barcin, WHG, Iran_GanjDareh_N/CHG, and Russia_Samara_EBA_Yamnaya, except for group 4, which requires the addition of Siberian ancestry.
Most Himerans associated with the battles can be found clustering on the PCA closely with individuals from the Greece_LBA, consistent with a major contribution of individuals of primarily Greek ancestry in the Himeran forces and substantial genetic continuity between the LBA period in Greece and fifth-century-BCE Greek colonies in Sicily. These soldiers with at least some Greek ancestry could have been inhabitants of the colony or supporting armies from other colonies, such as Syracuse. Seven of the 16 soldiers of the 480 BCE battle (Sicily_Himera_480BCE_1) and all 5 of the soldiers of the 409 BCE battle (Sicily_Himera_409BCE) are part of this main genetic cluster. Using the qpWave/qpAdm framework, we can model each of the soldiers in these two groups as deriving their ancestry either 100% from a group related to Greece_LBA or from an admixture between a Sicilian LBA or IA source and an Aegean-related source in varying proportions (SI Appendix, Tables S16 and S17), suggesting that many soldiers (and all studied from the 409 BCE battle) were plausibly the descendants of the Greek colonizers of Sicily and that intermarriage between Greeks and Sicilian locals was practiced (63). This genetic evidence adds to our understanding of social practices in Greek colonies in Sicily, because it is difficult to detect intermarriage archaeologically due to the fact that the presence of local Sicilian objects at Greek colonies may represent trade rather than intermarriage (59, 64, 65). Genetic data also provide information that may be invisible archaeologically, because individuals would have had the agency to decide which burial traditions and objects to adopt when interring their dead, and these archaeological identity markers, and the way individuals viewed their own identities, may or may not align with genetic ancestry (59, 66).
Beyond the intermarriage between locals and Himera’s Greek settlers, it is important to consider the possibility that the composition of the population might also have been influenced by a large-scale influx of Dorians from Agrigento after a political takeover by the Agrigentine tyrant, Theron, in 476 BCE, during which thousands of Himera’s inhabitants were killed (Diod. 11.49); however, the limited sample size available for analysis at this point and the lack of comparative data from Dorian contexts does not allow us to test this hypothesis. In any case, both groups of soldiers are heterogeneous in their admixture with local Sicilians, indicating a different genetic history for each individual; while we can compellingly document that significant genetic variation existed, a larger sample size than we have available would be necessary to adequately characterize the distribution of genetic variation encompassed by Sicilian Greek ethnicity in this period.
Among the soldiers of the 480 BCE battle, we find nine individuals that carry genetic ancestry not consistent with the first group (Fig. 2 and SI Appendix, Figs. S10–S13). We tested ancestry models with qpAdm for the higher coverage individuals.
Sicily_Himera_480BCE_2 consists of two outlying individuals (I10946/W1771 and I10950/W814) that fall on the PCA intermediate between the main cluster and central European individuals, a differentiation also indicated by the relatively higher proportion of the WHG genetic cluster in ADMIXTURE. Testing a wide range of possible BA and IA sources with qpAdm, valid models of ancestry consist of mixtures of one source related to central or eastern Mediterranean groups (Sicilian, Aegean, or Balkan) and one source related to central or western European groups (France, Spain, Czechia, or Hungary). A genetic origin in the Balkans is suggested by their Y chromosomes, belonging to the E-V13 lineage, which has its highest modern-day frequency in that region (67).
Two individuals (I10943/W0396 and I10949/W0403; Sicily_Himera_480BCE_3) fall with modern northeastern European groups and eastern Baltic populations of the first millennium BCE and can be modeled using exclusively BA individuals from Lithuania as a proxy source (P = 0.129).
One low-coverage individual, I17870/W0336, falls intermediate between Sicily_Himera_480BCE_2 and Sicily_Himera_480BCE_3 on both PCA and with respect to the main ancestry clusters inferred from ADMIXTURE (Fig. 2).
Two (I10944/W0461 and I10947/W1774; Sicily_Himera_480BCE_4) fall with individuals from IA nomadic contexts in the Eurasian Steppe and carry in the ADMIXTURE analysis genetic components maximized in Han and Karitiana (Native Americans) that characterize most IA Steppe nomads (light green and purple, respectively, in SI Appendix, Fig. S2B). In qpAdm, their ancestry is consistent, with around 85–89% deriving from IA Central steppe nomads and 11–15% from an Aegean-like source, an admixture that plausibly could have taken place among the genetically diverse populations of the Steppe (68, 69). Their mitochondrial DNA (mtDNA) haplogroups suggest east Eurasian genetic roots: A6a, found so far only in modern-day China (70, 71), and N1a1a1a, restricted to Russia, Kazakhstan, and Mongolia (72).
Finally, one outlier (I10951/W0653; Sicily_Himera_480BCE_5) falls with modern Caucasus populations and intermediate to ancient Steppe and Caucasus individuals on the PCA and carries the highest proportion of the CHG component in ADMIXTURE (Fig. 2). A single one-way model with a group closely related to Armenia_MBA as the source fit the data (P = 0.293). Similarly, the second low-coverage individual, I17872/W0428, falls closest to populations from the Caucasus on the PCA (Fig. 2A).
Outgroup-f3 statistics with ancient groups reflect the same general patterns of genetic affinities (SI Appendix, Fig. S16), as do proportions of distal ancestry estimated with qpAdm (SI Appendix, Table S8 and Dataset S5). The groups can all be modeled as deriving differing proportions of ancestry from groups related to Turkey_N_Barcin, WHG, Iran_GanjDareh_N/CHG, and Russia_Samara_EBA_Yamnaya, except for group 4, which requires the addition of Siberian ancestry.